Documentation
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FP3002 | Full Length Manual
Updated August 2025
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Bonsai Textbook
A comprehensive manual on how to build Bonsai workflows for basic recordings, optogenetics, synchronization with behavior cameras, and more. Utilizes the current versions of the “Neurophotometrics” and “Neurophotometrics.Design” packages (0.6.0).
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Bonsai Workflows
Download a zip file with all of the Bonsai workflows presented in the Bonsai Textbook. These workflows are meant to be used with the current versions of the “Neurophotometrics” and “Neurophotometrics.Design” packages (0.6.0).
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Photometry Analysis Guide
Updated Feb 26, 2025
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Neurophotometrics 0.6.1 Update
Details on the changes made to the “Neurophotometrics” and “Neurophotometrics Design” package in version 0.6.1
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Neurophotometrics.0.6.0 Update
Details on the changes made to the “Neurophotometrics” and “Neurophotometrics.Design” packages in version 0.6.0
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Bonsai Textbook (0.5.6 and earlier)
A comprehensive manual on how to make all the bonsai workflows need. Utilizes the older versions of the “Neurophotometrics” and “Neurophotometrics.Design” packages (0.5.6 or older).
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Bonsai Workflows (0.5.6 and earlier)
Download a zip file with all of the Bonsai workflows presented in the Old Bonsai Textbook. These workflows are meant to be used with older versions of the “Neurophotometrics” and “Neurophotometrics.Design” packages (0.5.6).
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Getting Started with Bonsai
Bonsai is an open source software capable of processing many heterogeneous streams of data in parallel; it is also our software of choice for running fiber photometry experiments using a Neurophotometrics system.
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FP3001 | User Manual
View and download the latest version of the FP3001 User Manual.
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FP3001 | V1 bonsai update
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FP3001 | Swapping out your FC Adaptor for an SMA Adaptor
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FP3001 | Increasing the Frame Rate of your NPM System
Adjust the camera settings to record speeds up to 100 Hz. Note: FP3002 is already set to 200Hz at default.
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FP3001 | Reducing the Power Output of Your 470 LED